The detailed information of tRNA gene sequence


Sequence ID>WENV180095394
Genome IDMTBK01066531
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 163
End posion on genome 259
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
aatactcgat
tRNA gene sequence 
GGAGGCAGACGGGTTCTGGTGTGCCCCGCGGTCTTCAAAACCGTTGAGGGGGGTTAGTAG
CCTCCCAGGTGAGTTCGATTCTCACATGTCTCCGCCA
Downstream region at tRNA end position 
ccgaaacgcg
Secondary structure (Cloverleaf model)
>WENV180095394	SeC	TCA
                   t      GCCA ccgaaacgcg
                     G - C
                     G - C
                     A - T
                     G - C
                     G + T
                     C - G
                     A - T
                     G   A          T T
                    A     C A C T C     A
      T C T        C      | | | | |     G
    G       T G G G       G T G A G     C
    G       + | | |                 T T
    T       G C C C
      G T          C     TGAGGGGGGTTAGTAGCCTCCCAG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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