The detailed information of tRNA gene sequence


Sequence ID>WENV180096502
Genome IDMTBK01132894
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 16305
End posion on genome 16401
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
aatactgcat
tRNA gene sequence 
GGAGGCAGATGGGTTCTGGTGTGCCCCGCGGTCTTCAAAACCGTTGAGGGGGGTTAGGAG
CCTCCCGGGTGAGTTCGATTCTCACATGCTTCCGCCA
Downstream region at tRNA end position 
gttgaaacgc
Secondary structure (Cloverleaf model)
>WENV180096502	SeC	TCA
                   t      GCCA gttgaaacgc
                     G - C
                     G - C
                     A - T
                     G + T
                     G - C
                     C - G
                     A - T
                     G   A          T T
                    A     C A C T C     A
      T C T        T      | | | | |     G
    G       T G G G       G T G A G     C
    G       + | | |                 T T
    T       G C C C
      G T          C     TGAGGGGGGTTAGGAGCCTCCCGG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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