The detailed information of tRNA gene sequence


Sequence ID>WENV180097287
Genome IDMTBK01178585
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 8021
End posion on genome 8114
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
ccttagctgt
tRNA gene sequence 
GGGAGTGGTCAGGTCCCGGTGGGCCTCCCGGTCTTCAAAATCGGTGTCGGGTCGCTTGGC
GAGCCGTGGTGGGTTCGACTCCCATCCATTCCCGtct
Downstream region at tRNA end position 
tgtaaagagg
Secondary structure (Cloverleaf model)
>WENV180097287	SeC	TCA
                   t      Gtct tgtaaagagg
                     G - C
                     G - C
                     G - C
                     A - T
                     G + T
                     T - A
                     G - C
                     G - C          T C
                    T     T A C C C     A
      C C C        C      + | | | |     G
    G       T G G A       G T G G G     C
    G       + | | |                 T T
    T       G C C T
      G G          C     TGTCGGGTCGCTTGGCGAGCCGTG
                    C - G
                    C - G
                    G - C
                    G + T
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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