The detailed information of tRNA gene sequence


Sequence ID>WENV180098242
Genome IDMTBK01235178
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 156
End posion on genome 61
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
ttcgacaagt
tRNA gene sequence 
GGGGGTAGTTAGATAGCTGGTGCTTCTCCTGGACTTCAAATCCAGTGGTGGGCCTGAAAA
GTCCACGGTGGGTTCGATTCCCATCTACTCCCGCCA
Downstream region at tRNA end position 
gcagaagggg
Secondary structure (Cloverleaf model)
>WENV180098242	SeC	TCA
                   t      GCCA gcagaagggg
                     G - C
                     G - C
                     G - C
                     G + T
                     G - C
                     T - A
                     A - T
                     G - C          T T
                    T     T A C C C     A
      C G A        T      + | | | |     G
    T       T A G A       G T G G G     C
    G         | | |                 T T
    G       T T C T
      T G C        C     TGGTGGGCCTGAAAAGTCCACG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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