The detailed information of tRNA gene sequence


Sequence ID>WENV180098822
Genome IDMTBK01268905
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 1564
End posion on genome 1468
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tacccccggt
tRNA gene sequence 
GGAAGCGGTCGGGTCCTGGTGGGTCCCCCGGACTTCAAATCCGGTGTGGGGCGCGTCGAG
CGTCCTGGGCAGGTTCGATTCCTGTGCGCTTCCGCCA
Downstream region at tRNA end position 
tgttcttcct
Secondary structure (Cloverleaf model)
>WENV180098822	SeC	TCA
                   t      GCCA tgttcttcct
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     G - C
                     G   G          T T
                    T     T G T C C     A
      T C C        C      + | | | |     G
    G       T G G G       G C A G G     C
    G       + + | |                 T T
    T       G T C C
      G G          C     TGTGGGGCGCGTCGAGCGTCCTGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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