The detailed information of tRNA gene sequence


Sequence ID>WENV180098945
Genome IDMTBK01277023
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 423
End posion on genome 517
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
taatgagtgt
tRNA gene sequence 
GGGAGCAGAAGGGTGCTGGTGTGCCTGCCGGACTTCAAATCCGGTTCCTCGTTCAAAAGA
CGAGGGGTGGGTTCGATTCCCACATGCTCCCGCCA
Downstream region at tRNA end position 
acaactttat
Secondary structure (Cloverleaf model)
>WENV180098945	SeC	TCA
                   t      GCCA acaactttat
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     A - T
                     G   A          T T
                    A     C A C C C     A
      T C G        A      | | | | |     G
    G       T G G G       G T G G G     C
    G       + | | +                 T T
    T       G C C T
      G T          G     TTCCTCGTTCAAAAGACGAGGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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