The detailed information of tRNA gene sequence


Sequence ID>WENV180098994
Genome IDMTBK01280727
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 25295
End posion on genome 25389
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aaaaatcagc
tRNA gene sequence 
GGAGAGATGGCTGAGTGGCCGAAAGCGATCGCCTGCTAAGCGATTGTACGCCCTTCAAAG
GTGTACCGCGGGTTCAAATCCCGCTCTCTCCGCCA
Downstream region at tRNA end position 
ttttttattc
Secondary structure (Cloverleaf model)
>WENV180098994	Ser	GCT
                   c      GCCA ttttttattc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C G C C C     A
      T G A        G      | | | | |     A
    G       G T C G       G C G G G     C
    G         | | |                 T T
    C       A A G C
      C G A        G     TGTACGCCCTTCAAAGGTGTACC
                    A - T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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