The detailed information of tRNA gene sequence


Sequence ID>WENV180099340
Genome IDNKAJ01001924
Search identical group
Phylum/Class[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
Species
Start position on genome 11824
End posion on genome 11921
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
ttatattatt
tRNA gene sequence 
GGAAGTGCGCAGTTCACTGGTGGGGCTCCCGGACTTCAAATCCGGTGTGGGGCGCTAAAA
CCGTCCCGGGTGGGTTCGATTCCCATGCACTTCCGCCA
Downstream region at tRNA end position 
ttcaatttat
Secondary structure (Cloverleaf model)
>WENV180099340	SeC	TCA
                   t      GCCA ttcaatttat
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     C - G          T T
                    G     T A C C C     A
      C A C        C      + | | | |     G
    T       T T G A       G T G G G     C
    G       + + | |                 T T
    G       G G C T
      T G G        C     TGTGGGGCGCTAAAACCGTCCCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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