The detailed information of tRNA gene sequence


Sequence ID>WENV180320422
Genome IDOBKO01008220
Search identical group
Phylum/Class[OBKO] soil metagenome; Alaskan Permafrost
Species
Start position on genome 97
End posion on genome 193
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
caatcgattt
tRNA gene sequence 
GGAAGTGAACGGGGCCCGGTGGCCCTCCCGGTCTTCAAAATCGGTCGCTCCCCGTTTACG
CGGGGAGGCTGGGTTCGACTCCCAGGCGCTTCCGCCA
Downstream region at tRNA end position 
atccccaatc
Secondary structure (Cloverleaf model)
>WENV180320422	SeC	TCA
                   t      GCCA atccccaatc
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T + G
                     G - C
                     A   G          T C
                    A     G A C C C     A
      C C C        C      | | | | |     G
    G       G G G G       C T G G G     C
    G       | | | +                 T T
    T       C C C T
      G G          C     TCGCTCCCCGTTTACGCGGGGAGG
                    C - G
                    C - G
                    G - C
                    G + T
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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