The detailed information of tRNA gene sequence


Sequence ID>ENV08000796
Genome IDABMJ01031014
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 34
End posion on genome 110
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
agattcttaa
tRNA gene sequence
CCCCCTGTAGCTCAATCGGTTAGAGCGGACGACTCATAATCGTTAGGTTATCGGTTCAAG
TCCGGTCGGGGGGACCA
Downstream region at tRNA end position
atatttcnnn
Secondary structure (Cloverleaf model)
>ENV08000796	Met	CAT
                   a      ACCA atatttcnnn
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     T + G
                     G - C          T G
                    T     T G G C C     A
      T A A        A      | + | | |     A
    C       C T C G       A T C G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTT
                    G + T
                    A - T
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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