The detailed information of tRNA gene sequence


Sequence ID>ENV08000828
Genome IDABMJ01082410
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 99
End posion on genome 26
Amino Acid Pseudo
Anticodon CCA
Upstream region at tRNA start position 
ngggccttct
tRNA gene sequence 
ATCGCTCAGGTGTTATGGCTGCATGACGGTCTCCAAAACCGTGGGTCAGGGTTCGATTCC
CTGGGGCGGTGCGA
Downstream region at tRNA end position 
gtgtcacaaa
Secondary structure (Cloverleaf model)
>ENV08000828	Pseudo	CCA
                   t      GCGA gtgtcacaaa
                     A - T
                     T + G
                     C - G
                     G - C
                     C - G
                     T + G
                     C - G          T T
                    A     G T C C C     A
        A T        G      | | | | |     G
      T     T G T G       C A G G G     C
      G     + | | +                 T T
      G     G C A T
        C T        G     GGGT
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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