The detailed information of tRNA gene sequence


Sequence ID>ENV08000846
Genome IDABMJ01162315
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 28
End posion on genome 100
Amino Acid Pseudo
Anticodon GCA
Upstream region at tRNA start position
tcttaataaa
tRNA gene sequence
GGCGTGTTGTCAGATCGGTTATGTAGGGCACTGCAAATGCTCGTAGGTAGGTTCGACTCC
TACACATGCCTCCn
Downstream region at tRNA end position
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>ENV08000846	Pseudo	GCA
                   a      TCCn nnnnnnnnnn
                     G - C
                     G - C
                     C - G
                     G + T
                     T - A
                     G - C
                     T - A          T C
                    T     C A T C C     A
        T A        G      | | | | |     G
      C     G A C T       G T A G G     C
      G       | |                   T T
      G     A T G T
        T T        A     GTAG
                    G - C
                    G + T
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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