The detailed information of tRNA gene sequence


Sequence ID>ENV08001172
Genome IDABMR01000745
Search identical group
Phylum/Classsaltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
Species
Start position on genome 116
End posion on genome 29
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
caaaaaagcc
tRNA gene sequence 
GGAGGGGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTAAGTCGAAAGGCTTC
GAGGGTTCGAATCCCTCCCCCTCCGCCA
Downstream region at tRNA end position 
gaatccttac
Secondary structure (Cloverleaf model)
>ENV08001172	Ser	GGA
                   c      GCCA gaatccttac
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G A G G G     C
    G         | | |                 T T
    T       A G G A
      C G A        G     TAAGTCGAAAGGCTTC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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