The detailed information of tRNA gene sequence


Sequence ID>ENV08001299
Genome IDABMW01008873
Search identical group
Phylum/Classfreshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 123
End posion on genome 47
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
nttaaaacct
tRNA gene sequence 
GGTTCGGTAGTTCAGTTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG
TCCCGTCCGTACCGCAA
Downstream region at tRNA end position 
aacaccctat
Secondary structure (Cloverleaf model)
>ENV08001299	Asp	GTC
                   t      GCAA aacaccctat
                     G - C
                     G - C
                     T - A
                     T   T
                     C - G
                     G - C
                     G - C          T G
                    T     T G C C C     A
      T G A        A      + | | | |     G
    T       C T T G       G C G G G     C
    G       | | | +                 T T
    G       G A A T
      T T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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