The detailed information of tRNA gene sequence


Sequence ID>ENV08001310
Genome IDABMW01028302
Search identical group
Phylum/Classfreshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 111
End posion on genome 22
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
accggcgttt
tRNA gene sequence 
GGAGAGATGGCAGAGTGGTCGAACGCGGCGGTCTTGAAAACCGTTGACCGTGTGAGCGGT
CCGGGGGTTCGAATCCCTCTCTCTCCGCAA
Downstream region at tRNA end position 
aaactaaagg
Secondary structure (Cloverleaf model)
>ENV08001310	Ser	TGA
                   t      GCAA aaactaaagg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | + | | |     G
    G       G A C G       G G G G G     C
    G           | |                 T T
    T       A C G C
      C G A        G     TGACCGTGTGAGCGGTCC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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