The detailed information of tRNA gene sequence


Sequence ID>ENV08001311
Genome IDABMW01029018
Search identical group
Phylum/Classfreshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 120
End posion on genome 34
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnnnnnnccc
tRNA gene sequence 
GGAGAGATGGCAGAGCGGTCGAATGCGGCGGTCTTGAAAACCGTTGACTGTCAAAAGGTC
CGGGGGTTCGAATCCCTCTCTCTCCGCtg
Downstream region at tRNA end position 
aaattagagc
Secondary structure (Cloverleaf model)
>ENV08001311	Ser	TGA
                   c      GCtg aaattagagc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      C G A        G      | + | | |     G
    G       G A C G       G G G G G     C
    G         | | |                 T T
    T       A T G C
      C G A        G     TGACTGTCAAAAGGTCC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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