The detailed information of tRNA gene sequence


Sequence ID>ENV08001312
Genome IDABMW01029479
Search identical group
Phylum/Classfreshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 24
End posion on genome 112
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cgcttctttt
tRNA gene sequence 
GGAGAGATGTCCGAGTGGTTTAAGGAGCACGCCTGGAAAGTGTGTATACCCCTAAAGGGT
ATCGAGGGTTCGAATCCCTCTTTCTCCGCat
Downstream region at tRNA end position 
cgtattttan
Secondary structure (Cloverleaf model)
>ENV08001312	Ser	GGA
                   t      GCat cgtattttan
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G + T
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G A G G G     C
    G         | | |                 T T
    T       A G G A
      T T A        G     TATACCCCTAAAGGGTATC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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