The detailed information of tRNA gene sequence


Sequence ID>ENV08001402
Genome IDABMY01009761
Search identical group
Phylum/Classfish metagenome; microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling
Species
Start position on genome 108
End posion on genome 34
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GGAAGGTTAGCTCAGTGGTAGAGCACTGCATTCACACTGCAGGGGTCGCAAGTTCAAACC
TTGCACTTTCCACCA
Downstream region at tRNA end position 
aattcagaaa
Secondary structure (Cloverleaf model)
>ENV08001402	Val	CAC
                   c      ACCA aattcagaaa
                     G - C
                     G - C
                     A - T
                     A - T
                     G + T
                     G - C
                     T - A          C A
                    T     C G T T C     A
        G A        A      | | | | |     A
      T     C T C G       G C A A G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     GGGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    A - T
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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