The detailed information of tRNA gene sequence


Sequence ID>ENV08001462
Genome IDABNC01002343
Search identical group
Phylum/Classfish metagenome; viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA, fish were sick at time of sampling)
Species
Start position on genome 82
End posion on genome 5
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ttttttttat
tRNA gene sequence 
TGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAGGGGGTTGCAGGTTCAA
GTCCTGTTTTTCCAACCA
Downstream region at tRNA end position 
aatannnnnn
Secondary structure (Cloverleaf model)
>ENV08001462	Pro	TGG
                   t      ACCA aatannnnnn
                     T - A
                     G - C
                     G - C
                     G + T
                     A - T
                     A - T
                     A - T          T G
                    T     T G T C C     A
      T A A        A      + | | | |     A
    T       T T C G       G C A G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        A     GGGGTT
                    C - G
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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