The detailed information of tRNA gene sequence


Sequence ID>ENV08001466
Genome IDABNC01003248
Search identical group
Phylum/Classfish metagenome; viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA, fish were sick at time of sampling)
Species
Start position on genome 116
End posion on genome 40
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ccttttttaT
tRNA gene sequence 
TGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAGGGGTTGCAGGTTCAAG
TCCTGTTTTCCAACCAa
Downstream region at tRNA end position 
atatgagata
Secondary structure (Cloverleaf model)
>ENV08001466	Pro	TGG
                   T      CCAa atatgagata
                     T - A
                     G   A
                     G - C
                     G - C
                     A - T
                     A - T
                     A - T          T G
                    T     T G T C C     A
      T A A        A      + | | | |     A
    T       T T C G       G C A G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        A     GGGTT
                    C - G
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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