The detailed information of tRNA gene sequence


Sequence ID>ENV08001467
Genome IDABNC01004755
Search identical group
Phylum/Classfish metagenome; viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA, fish were sick at time of sampling)
Species
Start position on genome 19
End posion on genome 95
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ccttttttat
tRNA gene sequence 
TGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAGGGGTTGCAGGTTCAAG
TCCTGTTTTTCCAACCA
Downstream region at tRNA end position 
aatatgagat
Secondary structure (Cloverleaf model)
>ENV08001467	Pro	TGG
                   t      ACCA aatatgagat
                     T - A
                     G - C
                     G - C
                     G + T
                     A - T
                     A - T
                     A - T          T G
                    T     T G T C C     A
      T A A        A      + | | | |     A
    T       T T C G       G C A G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        A     GGGTT
                    C - G
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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