The detailed information of tRNA gene sequence


Sequence ID>ENV08001473
Genome IDABND01003130
Search identical group
Phylum/Classfish metagenome; viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease
Species
Start position on genome 15
End posion on genome 105
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cccgaatcca
tRNA gene sequence 
GGAGAGGTGGNTGAGTGGTTGAAGTCGCACGCCTGGAAAGCGTGTATAGGTTAATAGCCT
ATCGGGGGTTCGAATCCCCCTCTCTCCGCCA
Downstream region at tRNA end position 
aaatgaaaac
Secondary structure (Cloverleaf model)
>ENV08001473	Ser	GGA
                   a      GCCA aaatgaaaac
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C C C C C     A
      T G A        G      | | | | |     G
    G       G T N G       G G G G G     C
    G         +   |                 T T
    T       A G T C
      T G A        G     TATAGGTTAATAGCCTATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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