The detailed information of tRNA gene sequence


Sequence ID>ENV08001529
Genome IDABNH01004968
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 111
End posion on genome 37
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
nnaaaaatat
tRNA gene sequence 
GCGGCGCTAGTTCAGTGGTCAGAACACCCGACTTTCTCTCGGGTAACAAGGGTTCGATTC
CCTTGCGCCGTGCCA
Downstream region at tRNA end position 
ccctttcaaa
Secondary structure (Cloverleaf model)
>ENV08001529	Glu	TTC
                   t      GCCA ccctttcaaa
                     G + T
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G          T T
                    T     T T C C C     A
      T G A        A      | | | | |     G
    G       C T T G       A A G G G     C
    G       | | | |                 T T
    T       G A A C
      C A          A     TAAC
                    C - G
                    C - G
                    C - G
                    G - C
                    A - T
                  C       C
                  T       T
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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