The detailed information of tRNA gene sequence


Sequence ID>ENV08001553
Genome IDABNI01019625
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 40
End posion on genome 112
Amino Acid Pseudo
Anticodon GCA
Upstream region at tRNA start position 
attttcaaat
tRNA gene sequence 
GGTCTTGTAGCCAAGTGGTTAGGCGGAGTTCTGCAAAAACTTCATAACAGCGGTTCGAAT
CCGTTCAAGACCTnnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>ENV08001553	Pseudo	GCA
                   t      Tnnn nnnnnnnnnn
                     G - C
                     G - C
                     T - A
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     T T G C C     A
        G A        A      | + | | |     G
      T     A C C G       A G C G G     C
      G       | | |                 T T
      G     A G G C
        T T        G     CATAAC
                    G + T
                    A - T
                    G - C
                    T - A
                    T - A
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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