The detailed information of tRNA gene sequence


Sequence ID>ENV08001562
Genome IDABNI01052423
Search identical group
Phylum/Classfreshwater metagenome; viral fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
Species
Start position on genome 21
End posion on genome 93
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
atggaagaat
tRNA gene sequence 
GATGACATGGCTGAATGGATTTAGGCTGTCGGCTGCAACCCGACCTATACAGGTTCGAAT
CCTGTTGTCATCTann
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>ENV08001562	Cys	GCA
                   t      Tann nnnnnnnnnn
                     G - C
                     A - T
                     T - A
                     G - C
                     A - T
                     C - G
                     A - T          T A
                    T     T G T C C     A
      T A A        G      | | | | |     G
    G       G T C G       A C A G G     C
    G         + | |                 T T
    A       A G G C
      T T T        T     CTAT
                    G - C
                    T - A
                    C - G
                    G - C
                    G - C
                  C       C
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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