The detailed information of tRNA gene sequence


Sequence ID>ENV08001566
Genome IDABNJ01009951
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 110
End posion on genome 33
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
ttagactaaa
tRNA gene sequence 
GGAGCGGTAAGTTCAGTTGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGA
GTCCCGTCCGCTCCGCCT
Downstream region at tRNA end position 
aacattaaag
Secondary structure (Cloverleaf model)
>ENV08001566	Asp	GTC
                   a      GCCT aacattaaag
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    T     T G C C C     A
    T G A C        A      + | | | |     G
  T         T T G A       G C G G G     C
  G         + |   |                 T T
  G         G A A T
    T T A          A     GGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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