The detailed information of tRNA gene sequence


Sequence ID>ENV08001569
Genome IDABNJ01014397
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 108
End posion on genome 18
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
cgcctcgttc
tRNA gene sequence 
GGAGGGGTGGCAGAGTGGTTTAATGCACCGGTCTTGAAAACCGGCGTGGGTTTATAGCCC
ACCCAGGGTTCAAATCCCTGCTCCTCCGCCA
Downstream region at tRNA end position 
tattaagtca
Secondary structure (Cloverleaf model)
>ENV08001569	Ser	TGA
                   c      GCCA tattaagtca
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     G T C C C     A
      T G A        G      | | | | |     A
    G       G A C G       C A G G G     C
    G         | | |                 T T
    T       A T G C
      T T A        A     CGTGGGTTTATAGCCCACC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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