The detailed information of tRNA gene sequence


Sequence ID>ENV08001570
Genome IDABNJ01014523
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 121
End posion on genome 27
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
nnnnnnnntt
tRNA gene sequence 
GGAAGAACGTCGTCTCCGGTGAGGCGTCCGGATTTCAAATCCGGGTAGGGCTGCCAGCAG
TCCTGGGTAGGTTCGACTCCTATGTTCTTCCGCCA
Downstream region at tRNA end position 
attctcatag
Secondary structure (Cloverleaf model)
>ENV08001570	SeC	TCA
                   t      GCCA attctcatag
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     A - T
                     A - T
                     C - G          T C
                    G     T A T C C     A
      C C T        T      + | | | |     G
    G       C T G C       G T A G G     C
    G       | + | |                 T T
    T       G G C G
      G A          T     GTAGGGCTGCCAGCAGTCCTGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK