The detailed information of tRNA gene sequence


Sequence ID>ENV08001576
Genome IDABNJ01024515
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 109
End posion on genome 19
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tcgctcgttc
tRNA gene sequence 
GGAGGGGTGGCAGAGTGGTTTAATGCACCGGTCTTGAAAACCGGCGTGGGTTTATAGCCC
ACCCAGGGTTCAAATCCCTGCTCCTCCGCCA
Downstream region at tRNA end position 
tatttagtca
Secondary structure (Cloverleaf model)
>ENV08001576	Ser	TGA
                   c      GCCA tatttagtca
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     G T C C C     A
      T G A        G      | | | | |     A
    G       G A C G       C A G G G     C
    G         | | |                 T T
    T       A T G C
      T T A        A     CGTGGGTTTATAGCCCACC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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