The detailed information of tRNA gene sequence


Sequence ID>ENV08001580
Genome IDABNJ01034955
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 27
End posion on genome 101
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ttggggtttt
tRNA gene sequence 
ACGGGCATAGTACAACGGTTAGTATAGAGGTCTCCAAAACCTTTGATCTGGGTTCGAATC
CTAGTGCCCGTGCGA
Downstream region at tRNA end position 
aaaatttgaa
Secondary structure (Cloverleaf model)
>ENV08001580	Trp	CCA
                   t      GCGA aaaatttgaa
                     A - T
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T          T A
                    T     G A T C C     A
      C A A        A      | | + | |     G
    G       C A T G       C T G G G     C
    G       | | | +                 T T
    T       G T A T
      T A          A     TGAT
                    G + T
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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