The detailed information of tRNA gene sequence


Sequence ID>ENV08001581
Genome IDABNJ01036530
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 41
End posion on genome 116
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
cgagtttttt
tRNA gene sequence 
AGGGCAATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGTTGTGGGTTCGATT
CCCTCTTGCCCTGCCA
Downstream region at tRNA end position 
aannnnnnnn
Secondary structure (Cloverleaf model)
>ENV08001581	Trp	CCA
                   t      GCCA aannnnnnnn
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     A - T          T T
                    T     C T C C C     A
      T A A        A      |   | | |     G
    T       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     AGGTT
                    T - A
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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