The detailed information of tRNA gene sequence


Sequence ID>ENV08001609
Genome IDABNJ01088362
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 12
End posion on genome 88
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agatatcgga
tRNA gene sequence 
CGCGGGATGGAGCAGCATGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA
TCCGGCTCCCGCAACCA
Downstream region at tRNA end position 
ctttaatata
Secondary structure (Cloverleaf model)
>ENV08001609	Met	CAT
                   a      ACCA ctttaatata
                     C   A
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C G G C C     A
      C G A        G      | + | | |     A
    A       C G A G       G T C G G     C
    T       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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