The detailed information of tRNA gene sequence


Sequence ID>ENV08001613
Genome IDABNJ01097345
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 109
End posion on genome 20
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
nnnnnnnnnc
tRNA gene sequence 
GGTGAGGTGTCTGAGTGGCTGAAGGAGCACGCCTGGAAAGTGTGTATACGCGAAAGTGTA
TCGAGGGTTCGAACCCCTCTCTCACCGCCA
Downstream region at tRNA end position 
tattttaaag
Secondary structure (Cloverleaf model)
>ENV08001613	Ser	GGA
                   c      GCCA tattttaaag
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     G - C
                     G + T          C A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G T C T       G A G G G     C
    G         + | |                 T T
    C       A G G A
      T G A        G     TATACGCGAAAGTGTATC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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