The detailed information of tRNA gene sequence


Sequence ID>ENV08001617
Genome IDABNJ01112088
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 105
End posion on genome 30
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
nnnnnnncgt
tRNA gene sequence 
GGCCGAGTAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTTGTGTCGGCAGTTCGATT
CTGTCCTCGGCCACCA
Downstream region at tRNA end position 
ccctgcccct
Secondary structure (Cloverleaf model)
>ENV08001617	Phe	GAA
                   t      ACCA ccctgcccct
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C          T T
                    T     C T G T C     A
      T G A        A      | + | | |     G
    C       C T C G       G G C A G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GTGTC
                    G + T
                    A - T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G A A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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