The detailed information of tRNA gene sequence


Sequence ID>ENV08001619
Genome IDABNJ01117100
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 107
End posion on genome 21
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
nnnnnnnnnt
tRNA gene sequence 
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTG
AGGGTTCAAGTCCCTCTCTTCGCACCA
Downstream region at tRNA end position 
aataaccaca
Secondary structure (Cloverleaf model)
>ENV08001619	Leu	CAG
                   t      ACCA aataaccaca
                     G - C
                     C - G
                     G - C
                     A - T
                     A - T
                     G - C
                     G + T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        G     TGTCCTTACGGACGT
                    C - G
                    T - A
                    A - T
                    G + T
                    C - G
                  T       T
                  T       G
                    C A G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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