The detailed information of tRNA gene sequence


Sequence ID>ENV08001627
Genome IDABNJ01138625
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 106
End posion on genome 31
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
nnnnnnnnnn
tRNA gene sequence 
TCCCCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCAAGT
CCAGTCAGGGGAGCCA
Downstream region at tRNA end position 
tattttctaa
Secondary structure (Cloverleaf model)
>ENV08001627	Asn	GTT
                   n      GCCA tattttctaa
                     T - A
                     C - G
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C          T G
                    T     T G A C C     A
      T G A        A      | | | | |     A
    C       C T T G       A C T G G     C
    G       | | | |                 T T
    G       G A A C
      T A          G     ATGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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