The detailed information of tRNA gene sequence


Sequence ID>ENV08001635
Genome IDABNJ01172180
Search identical group
Phylum/Classmosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
Species
Start position on genome 85
End posion on genome 10
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
aaatgataat
tRNA gene sequence 
GCCGGCATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGAGTTCAACT
CTTGGTGCCGGCACCA
Downstream region at tRNA end position 
ttttctgtgn
Secondary structure (Cloverleaf model)
>ENV08001635	Thr	TGT
                   t      ACCA ttttctgtgn
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     A - T          T C
                    T     G G T T C     A
      T G A        A      | | + | |     A
    T       C T C G       C C G A G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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