The detailed information of tRNA gene sequence


Sequence ID>ENV08001645
Genome IDABNK01001340
Search identical group
Phylum/Classcoral metagenome; viral fraction from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef Corals collected 3 meters apart and at 3 meters depth and rinsed extensively in filtered autoclaved seawater before processing
Species
Start position on genome 123
End posion on genome 48
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
nnnnnctatt
tRNA gene sequence 
GGGCAGTTCATCTAGTGGTTTAGGATCCCGGATTGTCTATCCGGTCACGGGGGTTCGACT
CCCCCACCGCCCGCCA
Downstream region at tRNA end position 
atcatacttt
Secondary structure (Cloverleaf model)
>ENV08001645	Asp	GTC
                   t      GCCA atcatacttt
                     G - C
                     G - C
                     G - C
                     C - G
                     A   C
                     G - C
                     T - A          T C
                    T     C C C C C     A
      T G A        C      | | | | |     G
    G       T C T A       G G G G G     C
    G       + | | |                 T T
    T       G G A T
      T T A        C     TCAC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       T
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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