The detailed information of tRNA gene sequence


Sequence ID>ENV08001646
Genome IDABNK01005946
Search identical group
Phylum/Classcoral metagenome; viral fraction from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef Corals collected 3 meters apart and at 3 meters depth and rinsed extensively in filtered autoclaved seawater before processing
Species
Start position on genome 33
End posion on genome 106
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
actaccacta
tRNA gene sequence 
CGGGGTGTAGCTCAGTTTGGTAGAGCACTCGCTTTGGGAGCGAGTGGCCGAAGGTTCAAA
TCCTTTCACCCCGAttt
Downstream region at tRNA end position 
ttcttatnnn
Secondary structure (Cloverleaf model)
>ENV08001646	Pro	TGG
                   a      Attt ttcttatnnn
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     T T T C C     A
      T G A        A      + | | | |     A
    T       C T C G       G A A G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        A     TGGCC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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