The detailed information of tRNA gene sequence


Sequence ID>ENV08001690
Genome IDABNY01015544
Search identical group
Phylum/Classsaltern metagenome; microbial fraction from plasmids from marine microbial community in low salinity saltern in San Diego, CA
Species
Start position on genome 21
End posion on genome 110
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
aaatcttcac
tRNA gene sequence 
GGAAGGATGGCAGAGTGGTTGAATGCACCGGTCTTGAAAACCGGCAAAGGGGCAACTCTT
TCCTGAGTTCGAATCTCAGTCCTTCCGCCA
Downstream region at tRNA end position 
ttaatttttn
Secondary structure (Cloverleaf model)
>ENV08001690	Ser	TGA
                   c      GCCA ttaatttttn
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     A - T          T A
                    T     G A C T C     A
      T G A        G      | | | | |     G
    G       G A C G       C T G A G     C
    G         | | |                 T T
    T       A T G C
      T G A        A     CAAAGGGGCAACTCTTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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