The detailed information of tRNA gene sequence


Sequence ID>ENV08001697
Genome IDABNY01025533
Search identical group
Phylum/Classsaltern metagenome; microbial fraction from plasmids from marine microbial community in low salinity saltern in San Diego, CA
Species
Start position on genome 96
End posion on genome 7
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
gagcgattaa
tRNA gene sequence 
GGAGAGATGCTCGAGTGGTTTAAGAGAACAGTCTTGAAAACTGTCGTGCCGGCAACGGTA
CCGTGGGTTCGAATCCCACTCTCTCCGCCA
Downstream region at tRNA end position 
cgttatnnnn
Secondary structure (Cloverleaf model)
>ENV08001697	Ser	TGA
                   a      GCCA cgttatnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C T C       G T G G G     C
    G         | | |                 T T
    T       A G A G
      T T A        A     CGTGCCGGCAACGGTACC
                    A - T
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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