The detailed information of tRNA gene sequence


Sequence ID>ENV08001735
Genome IDABOA01003461
Search identical group
Phylum/Classsaltern metagenome; viral fraction from high salinity saltern in San Diego, CA
Species
Start position on genome 18
End posion on genome 89
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
cgtttttaag
tRNA gene sequence 
GTCGGGCTGGCCGAGCGGCTAGGCAGGGCGCTGCAACCGTCCTTACAGCGGTTCGAATCC
GTTGCTCGCCTCat
Downstream region at tRNA end position 
tgggcgtaga
Secondary structure (Cloverleaf model)
>ENV08001735	Cys	GCA
                   g      TCat tgggcgtaga
                     G - C
                     T   C
                     C - G
                     G - C
                     G + T
                     G - C
                     C - G          T A
                    T     T T G C C     A
        G A        G      | + | | |     G
      C     G C C G       A G C G G     C
      G       | | |                 T T
      G     A G G C
        C T        A     TTAC
                    G - C
                    G - C
                    G + T
                    C - G
                    G - C
                  C       C
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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