The detailed information of tRNA gene sequence


Sequence ID>ENV08001740
Genome IDABOA01035419
Search identical group
Phylum/Classsaltern metagenome; viral fraction from high salinity saltern in San Diego, CA
Species
Start position on genome 3
End posion on genome 92
Amino Acid Pseudo
Anticodon GGA
Upstream region at tRNA start position 
nnnnnnnaaC
tRNA gene sequence 
GCCGTGATGTCCGAATTTGGTAAGGGGCGGGAGCTGGAACCTCCGTTAAGGCTGTAATGC
TGTCTCGGTTCAAATCCGAGTCACGGCGTtt
Downstream region at tRNA end position 
gtnnnnnnnn
Secondary structure (Cloverleaf model)
>ENV08001740	Pseudo	GGA
                   C      GTtt gtnnnnnnnn
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     G - C
                     A - T          T A
                    T     G A G C C     A
    T T A A        G      | | | | |     A
  T         G C C T       C T C G G     C
  G           | | +                 T T
  G         G G G G
    T A A          C     TTAAGGCTGTAATGCTGT
                    G   G
                    G - C
                    G - C
                    A - T
                    G - C
                  C       C
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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