The detailed information of tRNA gene sequence


Sequence ID>ENV08001762
Genome IDABOF01007887
Search identical group
Phylum/Classsaltern metagenome; viral fraction from high salinity saltern in San Diego, CA
Species
Start position on genome 105
End posion on genome 28
Amino Acid Pseudo
Anticodon GAG
Upstream region at tRNA start position 
taccgcttat
tRNA gene sequence 
ACGGAAGTGACGGGAATTGGCAGACCTGTCACGTTGAGAGCGTGGCGCTTGTAGGTTCGA
ACCCTACCTTCCGTACTA
Downstream region at tRNA end position 
tttgcctccg
Secondary structure (Cloverleaf model)
>ENV08001762	Pseudo	GAG
                   t      ACTA tttgcctccg
                     A - T
                     C - G
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C          C A
                    T     C A T C C     A
    T A A G        G      | | | | |     G
  T         G G C A       G T A G G     C
  G           |   |                 T T
  G         A C C T
    C A G          G     CGCTT
                    T + G
                    C - G
                    A - T
                    C - G
                    G - C
                  T       G
                  T       A
                    G A G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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