The detailed information of tRNA gene sequence


Sequence ID>WENV170000869
Genome IDAFSR01006578
Search identical group
Phylum/Class[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
Species
Start position on genome 12049
End posion on genome 12138
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gtgagcgtgc
tRNA gene sequence 
GGAGAAGTCGCATAGTGGTCTAGTGCGCTGGTTTGCTAAACCGGTGTACGCGAAAGCGTA
CCGAGGGTTCGAATCCCTCCTTCTCCGCCA
Downstream region at tRNA end position 
ccttcctttg
Secondary structure (Cloverleaf model)
>WENV170000869	Ser	GCT
                   c      GCCA ccttcctttg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C T C C C     A
      T G A        C      | | | | |     G
    G       T A C G       G A G G G     C
    G       + | | |                 T T
    T       G T G C
      C T A        G     TGTACGCGAAAGCGTACC
                    C - G
                    T + G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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