The detailed information of tRNA gene sequence


Sequence ID>ENV08001861
Genome IDABOG01043703
Search identical group
Phylum/Classsaltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
Species
Start position on genome 98
End posion on genome 24
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
nnnncacaac
tRNA gene sequence 
GGGTTGGTGGTCTAGCCAGGTTATGACGGCTCCTTCACACGGAGCAGGTCGGCAGTTCGA
ATCTGCCCCAACCCAtcc
Downstream region at tRNA end position 
actcgccttg
Secondary structure (Cloverleaf model)
>ENV08001861	Val	CAC
                   c      Atcc actcgccttg
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     G - C          T A
                    T     C C G T C     A
    C C G A        G      | | | | |     G
  A         T C T G       G G C A G     C
  G           | | |                 T T
  G         T G A C
    T T A          G     AGGTC
                    G - C
                    C - G
                    T - A
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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