The detailed information of tRNA gene sequence


Sequence ID>ENV08001920
Genome IDABOK01020243
Search identical group
Phylum/Classmosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
Species
Start position on genome 13
End posion on genome 107
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
ccttctccaa
tRNA gene sequence 
GGAAGATCCTCGTCCCCGGTGGGGCGGCCGGACTTCAAATCCGGTTGGGGCCGCCAGCGG
TCCTGGGCAGGTTCGACTCCTGTGATCTTCCGCCA
Downstream region at tRNA end position 
aagtacctct
Secondary structure (Cloverleaf model)
>ENV08001920	SeC	TCA
                   a      GCCA aagtacctct
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     A - T
                     T - A
                     C - G          T C
                    C     T G T C C     A
      C C C        T      + | | | |     G
    G       C T G C       G C A G G     C
    G       | + | |                 T T
    T       G G C G
      G G          G     TTGGGGCCGCCAGCGGTCCTGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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