The detailed information of tRNA gene sequence


Sequence ID>WENV170017152
Genome IDBARS01058208
Search identical group
Phylum/Class[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
Species
Start position on genome 281
End posion on genome 184
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aaatcaaagt
tRNA gene sequence 
GGAAGTGGAAAGCTCACTGGTGGGGCTCCCGGACTTCAAATCCGGTGCGCGGGGCTAGAA
CCCTCGCGGGTGGGTTCGATTCCCATGCACTTCCGCCA
Downstream region at tRNA end position 
atcacacgat
Secondary structure (Cloverleaf model)
>WENV170017152	SeC(p)	TCA
                   t      GCCA atcacacgat
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     G   G          T T
                    A     T A C C C     A
      C A C        A      + | | | |     G
    T       T C G A       G T G G G     C
    G       + | | |                 T T
    G       G G C T
      T G G        C     TGCGCGGGGCTAGAACCCTCGCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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