The detailed information of tRNA gene sequence


Sequence ID>WENV170019550
Genome IDBBPD01018334
Search identical group
Phylum/Class[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 451
End posion on genome 547
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aattgctagt
tRNA gene sequence 
GGGAGTAGATGTCTGCCTGGTGAGGGCCCCGGACTTCAAATCCGGTGGCGGGCGTTGATC
CGTCCGTGGTGGGTTCGATTCCCACCTACTACCGCCA
Downstream region at tRNA end position 
ttgttgattt
Secondary structure (Cloverleaf model)
>WENV170019550	SeC(p)	TCA
                   t      GCCA ttgttgattt
                     G - C
                     G - C
                     G   A
                     A - T
                     G - C
                     T - A
                     A - T
                     G - C          T T
                    A     C A C C C     A
      C C G        T      | | | | |     G
    T       T C T G       G T G G G     C
    G       + | + |                 T T
    G       G G G C
      T G A        C     TGGCGGGCGTTGATCCGTCCGTG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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