The detailed information of tRNA gene sequence


Sequence ID>WENV170020231
Genome IDBBPE01004579
Search identical group
Phylum/Class[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
Species
Start position on genome 1485
End posion on genome 1399
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gccaaggccg
tRNA gene sequence 
tGCCTCCGTGGCGGAATTGGTAGACGCAACGGTCTTCAAAACCGACGCCGGGCAGGCTTT
GGGGGTTCAAGTCCCCCCGGGGGCACCAc
Downstream region at tRNA end position 
cgcaaccgct
Secondary structure (Cloverleaf model)
>WENV170020231	SeC	TCA
                   g      CCAc cgcaaccgct
                     t - A
                     G - C
                     C - G
                     C - G
                     T + G
                     C - G
                     C - G
                     G - C          T G
                    T     C C C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G G G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     CGCCGGGCAGGCTTT
                    A   A
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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